Introduction | New Functions in GBScleanR Version 2 | Prerequisites | Installation | Error while Handling a GDS File | Loading Data | Utility Methods | Getters | Data Summarization | Collect Basic Summary Statistics | Visualize Basic Summary Statistics | Getter Methods for Summary Statistics | Filtering and Subsetting | Filtering Data | Important Instruction for Filtering | Reset Filtering | Error Correction | Set Replicates | Set Parents | Data QC and Filtering | Genotype Estimation | Prepare Scheme Information | Update on April 4, 2023 | Update on March 4, 2026 | Execute Genotype Estimation | Get the Results | Plot Read Ratio and Dosage | Closing the Connection | Session Info